00:01

Scholarship Committee Meeting

beau hilton, 2023-04-21

current

next

No notes.

Scholarship Committee Meeting

beau hilton, 2023-04-21

1

2

Background

undergrad = anthropology + musicology + activism == ethnomusicology

3

Background

ethnomusicology + lasers + MATLAB == ?

4

Background

automated quantitative differential diagnosis, explainable ML

5

Background

hello anthro, my old friend

6

Career goals

clinical oncologist

head/neck/esophagus

data scientist

computational anthropology, metascience

(🦒 + 🤖)

7

Current project

(click here)

8

Where in the world is hematology?

¹Gómez-De León

~5000 abstracts reviewed, ~500 had author from LMICs — ~5000 abstracts reviewed, ~500 had author from LMICs¹

9

Right [patient, drug, time, dose, route, place]

Léon Tshilolo, MD, PhD. ASH 2018, speaking on hydroxyurea in Sub-Saharan Africa.

10

Myopia

11

12

Current project

automate the extraction and structuring of all ~100k abstracts

13

Current project

keep it public, keep it safe

14

Current project

analysis pipeline

15

Current project

BYOA (bring your own analysis)

16

Planned analyses

trends
- geographic
- chronologic
- topologic
- ontologic
- biographic
disparities
- e.g. overlay maps of the disease itself (incidence, morbidity, etc.) and research about that disease
funding/resource allocation
- link with National Clinical Trial number (NCT)

h/t Hans Rosling

17

Next steps

finalize data structure
rewrite web scraper
redundant data storage
analyses (interactive)
automatic updates
abstract submission to ASCO (Feb 2024), ASH (Aug 2024)
manuscript (mid 2024)

18

Mentorship committee

Clinical Mentors

Dr Jennifer Choe (HN)
Dr Mike Gibson (HN/UGI)
alternate clinics

Research Mentors

Dr Travis Osterman (primary, local, EMR, structured pt journeys)
- 1:1 meetings at least monthly
Dr Jeremy Warner (second primary, abroad, HemOnc.org, ontology)
- 1:1 meetings at least q2mo
Dr Josh Peterson (Directer, Center for Precision Medicine, sequencing across large populations, clinical decision support)
- hope to meet soon

19

Other current projects

multiomics for sarcoma (PI: Osterman)
extreme biometry database (validated extremes in lab and radiographic parameters, to be used for data cleaning and exploration)

20

Future directions in fellowship

Goal 1: Develop clinical expertise in HN/UGI

Goal 2: Develop funding sources

early/training awards - e.g. T15
later awards - e.g. ITCR U01, U24, etc.
Links to relevant, current available FOA: Enhancement & Dissemination, Sustainment, Biomedical Data Repository, Biomedical Knowledgebase

Goal 3: ?Pursue clinical informatics fellowship

-> MS-ACI [21mo program]
r/b discussion ongoing (e.g. qualify for T15, opportunity cost)

21

Discuss!

22

moar slides follow, use prn

23

Challenges

Structure, standards

https://schema.datacite.org
FAIR
- Findable
- Accessible
- Interoperable
- Reusable

24

Challenges

`robots.txt`

25

Challenges

missing, incomplete, wrong

26

Challenges

Web scraping is the bug. Not sure who the other guy is.

27

Challenges (also a feature)

If you can write SQL, you can analyze the data.

28

Challenges (also a feature)

ChatGPT to the rescue?

29